About me
I am a PhD student at the Data Science and Mining Team of the Computer Science Laboratory at École Polytechnique, under the supervision of Prof. Michalis Vazirgiannis. In 2022, I completed an internship at Flatiron Institute of Simons Foundation in New York, where I worked on the application of graph neural networks for cancer gene prediction under the guidance of Prof. Zijun Frank Zhang. Prior to this, I graduated from the School of Electrical and Computer Engineering at the National Technical University of Athens (NTUA). During my undergraduate studies, I worked as a Machine Learning Researcher in Laboratory of Algebraic and Geometric Algorithms at National and Kapodistrian University of Athens under the supervision of Prof. Ioannis Emiris. I also successfully completed Google Summer of Code 2019.
I am deeply passionate about machine learning on graph-structured data. My research focuses on developing neural network architectures for graphs, aiming to solve real-world challenges, particularly in domains such as drug discovery and recommendation systems. At present, my research endeavors are directed towards the development of multimodal generative models for protein representation learning. This involves the fusion of graph and text data, leveraging Graph Neural Networks (GNNs) and Large Language Models (LLMs). I am also exploring the application of graph representation learning techniques in other fields such as AutoML and Neural Architecture Search.
News
- 2024-06-01 I am starting a research internship at InstaDeep working on GNNs and LLMs for genomics.
- 2023-01-15 Happy to serve as a mentor at LOGML Summer School 2024
- 2023-12-09 Our paper Prot2Text: Multimodal Protein's Function Generation with GNNs and Transformers has been accepted at AAAI 2024!
- 2023-10-27 Our paper Prot2Text: Multimodal Protein's Function Generation with GNNs and Transformers has been accepted as spotlight at DGM4H and AI4Science at NeurIPS 2023!
- 2023-10-17 Our paper Explainable Multilayer Graph Neural Network for Cancer Gene Prediction has been accepted at Bioinformatics!
- 2023-06-29 Our paper "Supervised Attention Using Homophily in Graph Neural Networks" has been accepted at ICANN 2023!
- 2023-02-16 Our paper Neural Architecture Search with Multimodal Fusion Methods for Diagnosing Demenntia has been accepted at ICASSP 2023!
- New paper preprint Explainable Multilayer Graph Neural Network for Cancer Gene Prediction
- 2023-01-23 Our paper Weisfeiler and Leman go Hyperbolic: Learning Distance Preserving Node Representations has been accepted at AISTATS 2023!
- 2022-11-21 Pleased to announce that our paper Graph Ordering Attention Networks has been accepted at AAAI 2023!
- 2022-11-04 New paper Preprint: Weisfeiler and Leman go Hyperbolic: Learning Distance Preserving Node Representations
- 2022-06-28 We presented our paper Graph Ordering Attention Networks in the LoGaG: Learning on Graphs and Geometry Reading Group. [Video]
- 2022-06-13 Pleased to anounce that our paper Mass Enhanced Node Embeddings for Drug Repurposing with Giannis Nikolentzos and Michalis Vazirgiannis, was accepted at ICML Workshop on Computational Biology 2022.
- 2022-06-01 I will spend this summer at Flatiron's Machine Learning Summer School in New York, working on graph neural networks for cancer risk prediction.
- We present our paper Graph-based Neural Architecture Search with Operation Embeddings at ICCV 2021 NAS Workshop . Paper, Code, Video, Poster